Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
NPHP1O15259 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.6■■■□□ 2.65
NPHP1O15259 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.6■■■□□ 2.65
NPHP1O15259 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP1O15259 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP1O15259 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP1O15259 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
NPHP1O15259 BHLHE23-202ENST00000612929 1109 ntBASIC31.58■■■□□ 2.65
NPHP1O15259 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
NPHP1O15259 AP004833.2-201ENST00000532228 1454 ntBASIC31.58■■■□□ 2.65
NPHP1O15259 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.57■■■□□ 2.64
NPHP1O15259 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.57■■■□□ 2.64
NPHP1O15259 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP1O15259 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
NPHP1O15259 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC31.57■■■□□ 2.64
NPHP1O15259 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.57■■■□□ 2.64
NPHP1O15259 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.57■■■□□ 2.64
NPHP1O15259 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
NPHP1O15259 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.56■■■□□ 2.64
NPHP1O15259 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
NPHP1O15259 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
NPHP1O15259 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP1O15259 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP1O15259 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP1O15259 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP1O15259 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.54■■■□□ 2.64
NPHP1O15259 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.54■■■□□ 2.64
NPHP1O15259 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP1O15259 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.53■■■□□ 2.64
NPHP1O15259 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
NPHP1O15259 AC026202.3-201ENST00000600805 1127 ntBASIC31.53■■■□□ 2.64
NPHP1O15259 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.53■■■□□ 2.64
NPHP1O15259 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP1O15259 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP1O15259 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC31.52■■■□□ 2.64
NPHP1O15259 ST7-AS1-201ENST00000456775 1889 ntBASIC31.52■■■□□ 2.64
NPHP1O15259 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
NPHP1O15259 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.52■■■□□ 2.64
NPHP1O15259 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.5■■■□□ 2.63
NPHP1O15259 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
NPHP1O15259 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC31.49■■■□□ 2.63
NPHP1O15259 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP1O15259 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.49■■■□□ 2.63
NPHP1O15259 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP1O15259 AL035685.1-201ENST00000636663 812 ntBASIC31.49■■■□□ 2.63
NPHP1O15259 RP9P-202ENST00000450133 1212 ntBASIC31.48■■■□□ 2.63
NPHP1O15259 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC31.48■■■□□ 2.63
NPHP1O15259 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
NPHP1O15259 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC31.47■■■□□ 2.63
NPHP1O15259 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC31.47■■■□□ 2.63
NPHP1O15259 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.47■■■□□ 2.63
NPHP1O15259 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
NPHP1O15259 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
NPHP1O15259 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
NPHP1O15259 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
NPHP1O15259 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
NPHP1O15259 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC31.46■■■□□ 2.63
NPHP1O15259 DUX4L9-201ENST00000449051 1259 ntBASIC31.46■■■□□ 2.63
NPHP1O15259 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
NPHP1O15259 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
NPHP1O15259 AC093536.1-201ENST00000569153 554 ntBASIC31.45■■■□□ 2.63
NPHP1O15259 AL451085.2-201ENST00000605085 799 ntBASIC31.45■■■□□ 2.63
NPHP1O15259 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.45■■■□□ 2.63
NPHP1O15259 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP1O15259 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP1O15259 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP1O15259 KRT8P33-201ENST00000508125 1423 ntBASIC31.42■■■□□ 2.62
NPHP1O15259 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP1O15259 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP1O15259 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.42■■■□□ 2.62
NPHP1O15259 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP1O15259 AC025884.2-201ENST00000553429 711 ntBASIC31.42■■■□□ 2.62
NPHP1O15259 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP1O15259 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.42■■■□□ 2.62
NPHP1O15259 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
NPHP1O15259 AC010980.1-201ENST00000587192 1142 ntBASIC31.41■■■□□ 2.62
NPHP1O15259 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
NPHP1O15259 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.4■■■□□ 2.62
NPHP1O15259 AC139795.1-202ENST00000500444 432 ntBASIC31.4■■■□□ 2.62
NPHP1O15259 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
NPHP1O15259 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.39■■■□□ 2.62
NPHP1O15259 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
NPHP1O15259 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.39■■■□□ 2.62
NPHP1O15259 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC31.39■■■□□ 2.62
NPHP1O15259 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
NPHP1O15259 TRIR-205ENST00000592273 783 ntTSL 3 BASIC31.38■■■□□ 2.61
NPHP1O15259 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.38■■■□□ 2.61
NPHP1O15259 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
NPHP1O15259 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
NPHP1O15259 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
NPHP1O15259 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
NPHP1O15259 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.37■■■□□ 2.61
NPHP1O15259 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
NPHP1O15259 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
NPHP1O15259 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.37■■■□□ 2.61
NPHP1O15259 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
NPHP1O15259 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
NPHP1O15259 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.35■■■□□ 2.61
NPHP1O15259 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP1O15259 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms