Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 REXO1L9P-201ENST00000604264 2108 ntBASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 MIPEPP3-201ENST00000412105 444 ntBASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 MTMR9LP-203ENST00000426597 1545 ntBASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 AC008894.3-201ENST00000624324 3103 ntBASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 AD000864.1-201ENST00000624076 2295 ntBASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USH1CQ9Y6N9 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 RCC2P6-201ENST00000526625 1557 ntBASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 AC092368.3-202ENST00000574180 1591 ntBASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USH1CQ9Y6N9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 FLJ13224-201ENST00000313737 1514 ntBASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 AC091874.3-201ENST00000512672 1195 ntBASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 AL160286.2-201ENST00000567150 934 ntBASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USH1CQ9Y6N9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms