Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CNTN3Q9P232 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CNTN3Q9P232 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CNTN3Q9P232 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CNTN3Q9P232 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 CHCHD2P8-201ENST00000429873 447 ntBASIC19.81■□□□□ 0.76
CNTN3Q9P232 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CNTN3Q9P232 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CNTN3Q9P232 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CNTN3Q9P232 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CNTN3Q9P232 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
CNTN3Q9P232 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 KRT18P56-201ENST00000507275 550 ntBASIC19.8■□□□□ 0.76
CNTN3Q9P232 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 MIR3180-1-201ENST00000580374 94 ntBASIC19.8■□□□□ 0.76
CNTN3Q9P232 MIR3180-3-201ENST00000584616 94 ntBASIC19.8■□□□□ 0.76
CNTN3Q9P232 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.8■□□□□ 0.76
CNTN3Q9P232 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CNTN3Q9P232 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 AC092119.3-201ENST00000612618 583 ntBASIC19.79■□□□□ 0.76
CNTN3Q9P232 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CNTN3Q9P232 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 AL024508.2-201ENST00000607749 1894 ntBASIC19.79■□□□□ 0.76
CNTN3Q9P232 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CNTN3Q9P232 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 AC099343.3-201ENST00000605834 2503 ntBASIC19.78■□□□□ 0.76
CNTN3Q9P232 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.78■□□□□ 0.76
CNTN3Q9P232 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.78■□□□□ 0.76
CNTN3Q9P232 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.78■□□□□ 0.76
CNTN3Q9P232 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CNTN3Q9P232 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms