Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
DDX28Q9NUL7 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
DDX28Q9NUL7 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
DDX28Q9NUL7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
DDX28Q9NUL7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
DDX28Q9NUL7 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
DDX28Q9NUL7 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
DDX28Q9NUL7 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.89■□□□□ 0.3
DDX28Q9NUL7 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 SDHAP1-207ENST00000440850 2000 ntBASIC16.89■□□□□ 0.29
DDX28Q9NUL7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 AC141586.5-201ENST00000624546 2050 ntBASIC16.89■□□□□ 0.29
DDX28Q9NUL7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 AC026366.1-201ENST00000488803 879 ntBASIC16.89■□□□□ 0.29
DDX28Q9NUL7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.89■□□□□ 0.29
DDX28Q9NUL7 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.89■□□□□ 0.29
DDX28Q9NUL7 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
DDX28Q9NUL7 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 ESRRAP1-201ENST00000400596 1257 ntBASIC16.88■□□□□ 0.29
DDX28Q9NUL7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 AC069544.1-201ENST00000609399 999 ntBASIC16.88■□□□□ 0.29
DDX28Q9NUL7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
DDX28Q9NUL7 PCDHA12-202ENST00000613593 2588 ntBASIC16.87■□□□□ 0.29
DDX28Q9NUL7 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
DDX28Q9NUL7 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms