Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS25Q9BRG1 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.89□□□□□ -0.35
VPS25Q9BRG1 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
VPS25Q9BRG1 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.89□□□□□ -0.35
VPS25Q9BRG1 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.89□□□□□ -0.35
VPS25Q9BRG1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC12.89□□□□□ -0.35
VPS25Q9BRG1 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
VPS25Q9BRG1 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.89□□□□□ -0.35
VPS25Q9BRG1 AC006333.2-201ENST00000607957 2099 ntBASIC12.89□□□□□ -0.35
VPS25Q9BRG1 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 CA15P2-201ENST00000611168 834 ntBASIC12.88□□□□□ -0.35
VPS25Q9BRG1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 MYO15B-237ENST00000642007 4893 ntBASIC12.88□□□□□ -0.35
VPS25Q9BRG1 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
VPS25Q9BRG1 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 AL121761.2-201ENST00000598007 1648 ntBASIC12.87□□□□□ -0.35
VPS25Q9BRG1 GCK-209ENST00000616242 2260 ntTSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
VPS25Q9BRG1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 AC009831.1-201ENST00000580420 1582 ntBASIC12.86□□□□□ -0.35
VPS25Q9BRG1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VPS25Q9BRG1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms