Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 MCCD1P2-201ENST00000423228 335 ntBASIC18.18■□□□□ 0.5
VPS13AQ96RL7 KRT18P27-201ENST00000427733 1299 ntBASIC18.18■□□□□ 0.5
VPS13AQ96RL7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 OR7E14P-202ENST00000530490 1290 ntBASIC18.18■□□□□ 0.5
VPS13AQ96RL7 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 MIR3180-4-201ENST00000582223 153 ntBASIC18.18■□□□□ 0.5
VPS13AQ96RL7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 AL035252.4-201ENST00000624174 288 ntBASIC18.18■□□□□ 0.5
VPS13AQ96RL7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 AC009947.1-201ENST00000444350 727 ntBASIC18.18■□□□□ 0.5
VPS13AQ96RL7 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 AC254562.1-201ENST00000417586 456 ntBASIC18.17■□□□□ 0.5
VPS13AQ96RL7 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
VPS13AQ96RL7 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 ELL2P1-201ENST00000413990 1906 ntBASIC18.16■□□□□ 0.5
VPS13AQ96RL7 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
VPS13AQ96RL7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 AL356309.3-201ENST00000624132 1934 ntBASIC18.15■□□□□ 0.5
VPS13AQ96RL7 RCC2P3-201ENST00000418112 1537 ntBASIC18.15■□□□□ 0.5
VPS13AQ96RL7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms