Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 AL359075.1-203ENST00000462729 1002 ntBASIC18.3■□□□□ 0.52
VPS35Q96QK1 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 AL157888.1-201ENST00000631930 593 ntBASIC18.3■□□□□ 0.52
VPS35Q96QK1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
VPS35Q96QK1 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS35Q96QK1 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 AL138781.2-201ENST00000617896 1843 ntBASIC18.29■□□□□ 0.52
VPS35Q96QK1 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 MIR149-201ENST00000384879 89 ntBASIC18.29■□□□□ 0.52
VPS35Q96QK1 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.29■□□□□ 0.52
VPS35Q96QK1 KRT18P38-201ENST00000449496 1282 ntBASIC18.29■□□□□ 0.52
VPS35Q96QK1 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.29■□□□□ 0.52
VPS35Q96QK1 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VPS35Q96QK1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 AC010331.1-201ENST00000611423 582 ntBASIC18.28■□□□□ 0.52
VPS35Q96QK1 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.28■□□□□ 0.52
VPS35Q96QK1 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS35Q96QK1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
VPS35Q96QK1 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 MIR1224-201ENST00000408193 85 ntBASIC18.27■□□□□ 0.52
VPS35Q96QK1 PVRIG2P-201ENST00000435460 978 ntBASIC18.27■□□□□ 0.52
VPS35Q96QK1 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS35Q96QK1 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
VPS35Q96QK1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms