Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 KRT16P1-201ENST00000399124 1418 ntBASIC19.93■□□□□ 0.78
CCDC42Q96M95 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 KRT18P41-201ENST00000518924 1277 ntBASIC19.92■□□□□ 0.78
CCDC42Q96M95 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 AC026271.3-201ENST00000571884 352 ntBASIC19.92■□□□□ 0.78
CCDC42Q96M95 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 AC020916.1-201ENST00000587762 1774 ntBASIC19.92■□□□□ 0.78
CCDC42Q96M95 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 AL353807.1-201ENST00000427475 662 ntBASIC19.91■□□□□ 0.78
CCDC42Q96M95 AC008040.2-201ENST00000461049 708 ntBASIC19.91■□□□□ 0.78
CCDC42Q96M95 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 AC130371.2-201ENST00000619443 611 ntBASIC19.91■□□□□ 0.78
CCDC42Q96M95 CR392000.1-201ENST00000624770 1228 ntBASIC19.91■□□□□ 0.78
CCDC42Q96M95 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 FAM207BP-201ENST00000447172 505 ntBASIC19.9■□□□□ 0.78
CCDC42Q96M95 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 LINC00896-202ENST00000609602 2128 ntBASIC19.9■□□□□ 0.78
CCDC42Q96M95 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC42Q96M95 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC42Q96M95 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC42Q96M95 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms