Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 KRT16P1-201ENST00000399124 1418 ntBASIC19.93■□□□□ 0.78
CCDC42Q96M95 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 KRT18P41-201ENST00000518924 1277 ntBASIC19.92■□□□□ 0.78
CCDC42Q96M95 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 AC026271.3-201ENST00000571884 352 ntBASIC19.92■□□□□ 0.78
CCDC42Q96M95 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 AC020916.1-201ENST00000587762 1774 ntBASIC19.92■□□□□ 0.78
CCDC42Q96M95 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC42Q96M95 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC42Q96M95 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 AL353807.1-201ENST00000427475 662 ntBASIC19.91■□□□□ 0.78
CCDC42Q96M95 AC008040.2-201ENST00000461049 708 ntBASIC19.91■□□□□ 0.78
CCDC42Q96M95 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 AC130371.2-201ENST00000619443 611 ntBASIC19.91■□□□□ 0.78
CCDC42Q96M95 CR392000.1-201ENST00000624770 1228 ntBASIC19.91■□□□□ 0.78
CCDC42Q96M95 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC42Q96M95 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC42Q96M95 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 FAM207BP-201ENST00000447172 505 ntBASIC19.9■□□□□ 0.78
CCDC42Q96M95 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 LINC00896-202ENST00000609602 2128 ntBASIC19.9■□□□□ 0.78
CCDC42Q96M95 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.9■□□□□ 0.78
CCDC42Q96M95 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC42Q96M95 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC42Q96M95 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC42Q96M95 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CCDC42Q96M95 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms