Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 AC004263.2-201ENST00000617183 678 ntBASIC18.47■□□□□ 0.55
HMGB4Q8WW32 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HMGB4Q8WW32 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 AC120114.3-201ENST00000611923 658 ntBASIC18.46■□□□□ 0.55
HMGB4Q8WW32 REXO1L6P-202ENST00000619970 1078 ntBASIC18.46■□□□□ 0.55
HMGB4Q8WW32 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 AL032819.2-201ENST00000624543 2162 ntBASIC18.46■□□□□ 0.55
HMGB4Q8WW32 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 HLA-A-201ENST00000376802 1334 ntBASIC18.46■□□□□ 0.55
HMGB4Q8WW32 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB4Q8WW32 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
HMGB4Q8WW32 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 TSPY12P-201ENST00000421279 868 ntBASIC18.45■□□□□ 0.54
HMGB4Q8WW32 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 AC023511.2-201ENST00000618803 211 ntBASIC18.45■□□□□ 0.54
HMGB4Q8WW32 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB4Q8WW32 AC007952.6-201ENST00000573168 2673 ntBASIC18.45■□□□□ 0.54
HMGB4Q8WW32 AC003957.1-201ENST00000625108 2673 ntBASIC18.45■□□□□ 0.54
HMGB4Q8WW32 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 AL163051.1-201ENST00000569214 1512 ntBASIC18.44■□□□□ 0.54
HMGB4Q8WW32 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms