Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 MYLKP1-201ENST00000509077 1580 ntBASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 GPAT2P1-201ENST00000444924 1672 ntBASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLHC1Q8NHS4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 AL135905.2-201ENST00000584934 1404 ntBASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 AL109659.2-201ENST00000606809 1674 ntBASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 AL023284.2-201ENST00000405850 579 ntBASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLHC1Q8NHS4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 AC096733.2-201ENST00000609937 1394 ntBASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 NUDT16P1-203ENST00000513809 620 ntBASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 AC113410.3-201ENST00000623366 203 ntBASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLHC1Q8NHS4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLHC1Q8NHS4 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLHC1Q8NHS4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLHC1Q8NHS4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CLHC1Q8NHS4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CLHC1Q8NHS4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLHC1Q8NHS4 AC093677.2-201ENST00000600169 1863 ntBASIC17.7■□□□□ 0.42
CLHC1Q8NHS4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLHC1Q8NHS4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLHC1Q8NHS4 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms