Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 PCDHA12-202ENST00000613593 2588 ntBASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 AL390719.1-204ENST00000412397 1219 ntBASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 RPPH1-201ENST00000516869 333 ntBASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ZNF540Q8NDQ6 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 AC012317.2-201ENST00000623305 2251 ntBASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNF540Q8NDQ6 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF540Q8NDQ6 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.08■□□□□ 0.33
ZNF540Q8NDQ6 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF540Q8NDQ6 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
ZNF540Q8NDQ6 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF540Q8NDQ6 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF540Q8NDQ6 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF540Q8NDQ6 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
ZNF540Q8NDQ6 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.08■□□□□ 0.32
ZNF540Q8NDQ6 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms