Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 NME4-212ENST00000621774 904 ntTSL 3 BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 AC083906.6-201ENST00000641366 219 ntBASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 EMD-201ENST00000369835 966 ntTSL 3 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 AP000593.1-201ENST00000393668 712 ntBASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 PENK-208ENST00000523051 772 ntTSL 5 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 AC005336.2-201ENST00000593183 939 ntBASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
USHBP1Q8N6Y0 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 MIR149-201ENST00000384879 89 ntBASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 AL590627.1-203ENST00000421194 1026 ntBASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 CALM1-205ENST00000553542 877 ntTSL 5 BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 MIR5100-201ENST00000579544 119 ntBASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USHBP1Q8N6Y0 SDHAP2-201ENST00000455183 2001 ntBASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 SLC25A1P1-201ENST00000528351 927 ntBASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 AL591684.3-201ENST00000605187 298 ntBASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USHBP1Q8N6Y0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 FAM197Y8-203ENST00000450145 560 ntBASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 AC009102.3-201ENST00000623118 1491 ntBASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 AL024508.2-201ENST00000607749 1894 ntBASIC24.24■■□□□ 1.47
USHBP1Q8N6Y0 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 BX640515.1-201ENST00000617215 977 ntBASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
USHBP1Q8N6Y0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 AC005082.1-201ENST00000413042 2259 ntBASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 USP39-202ENST00000409025 1946 ntTSL 5 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 AC132008.2-207ENST00000454517 770 ntBASIC24.22■■□□□ 1.47
USHBP1Q8N6Y0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms