Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF549Q6P9A3 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF549Q6P9A3 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF549Q6P9A3 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF549Q6P9A3 AC018470.1-201ENST00000624790 3129 ntBASIC18.32■□□□□ 0.52
ZNF549Q6P9A3 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 EGLN1P1-201ENST00000531623 762 ntBASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 HOXB1-202ENST00000577092 1414 ntBASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF549Q6P9A3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 AC090340.1-201ENST00000620778 4980 ntBASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF549Q6P9A3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 MMP23A-201ENST00000234610 1017 ntBASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 AC010653.2-201ENST00000623505 997 ntBASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.29■□□□□ 0.52
ZNF549Q6P9A3 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
ZNF549Q6P9A3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.28■□□□□ 0.52
ZNF549Q6P9A3 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
ZNF549Q6P9A3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF549Q6P9A3 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
ZNF549Q6P9A3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms