Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.33■■□□□ 1.01
SF3A1Q15459 AL133373.2-201ENST00000623187 2828 ntBASIC21.33■■□□□ 1.01
SF3A1Q15459 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC21.33■■□□□ 1
SF3A1Q15459 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SF3A1Q15459 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
SF3A1Q15459 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.33■■□□□ 1
SF3A1Q15459 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SF3A1Q15459 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
SF3A1Q15459 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
SF3A1Q15459 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1
SF3A1Q15459 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
SF3A1Q15459 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SF3A1Q15459 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SF3A1Q15459 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.32■■□□□ 1
SF3A1Q15459 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 NOC2LP1-202ENST00000452600 2235 ntBASIC21.32■■□□□ 1
SF3A1Q15459 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.32■■□□□ 1
SF3A1Q15459 KRT8P45-201ENST00000414328 1447 ntBASIC21.32■■□□□ 1
SF3A1Q15459 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 AL109659.2-201ENST00000606809 1674 ntBASIC21.32■■□□□ 1
SF3A1Q15459 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SF3A1Q15459 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.32■■□□□ 1
SF3A1Q15459 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.32■■□□□ 1
SF3A1Q15459 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.32■■□□□ 1
SF3A1Q15459 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 AC026471.1-201ENST00000564629 3026 ntBASIC21.32■■□□□ 1
SF3A1Q15459 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SF3A1Q15459 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.31■■□□□ 1
SF3A1Q15459 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SF3A1Q15459 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SF3A1Q15459 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.31■■□□□ 1
SF3A1Q15459 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.31■■□□□ 1
SF3A1Q15459 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 AL355355.2-201ENST00000442321 338 ntBASIC21.31■■□□□ 1
SF3A1Q15459 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.31■■□□□ 1
SF3A1Q15459 AC026471.5-201ENST00000615068 467 ntBASIC21.31■■□□□ 1
SF3A1Q15459 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
SF3A1Q15459 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.31■■□□□ 1
SF3A1Q15459 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
SF3A1Q15459 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 AL162741.1-201ENST00000565563 1558 ntBASIC21.31■■□□□ 1
SF3A1Q15459 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SF3A1Q15459 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.31■■□□□ 1
SF3A1Q15459 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.31■■□□□ 1
SF3A1Q15459 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SF3A1Q15459 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.3■■□□□ 1
SF3A1Q15459 AC005332.8-201ENST00000622750 2735 ntBASIC21.3■■□□□ 1
SF3A1Q15459 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.3■■□□□ 1
SF3A1Q15459 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.3■■□□□ 1
SF3A1Q15459 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SF3A1Q15459 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.3■■□□□ 1
SF3A1Q15459 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.3■■□□□ 1
SF3A1Q15459 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.3■■□□□ 1
SF3A1Q15459 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.3■■□□□ 1
SF3A1Q15459 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.3■■□□□ 1
SF3A1Q15459 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.3■■□□□ 1
SF3A1Q15459 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.3■■□□□ 1
SF3A1Q15459 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.3■■□□□ 1
SF3A1Q15459 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.3■■□□□ 1
SF3A1Q15459 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 GPAT2P1-201ENST00000444924 1672 ntBASIC21.3■■□□□ 1
SF3A1Q15459 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SF3A1Q15459 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SF3A1Q15459 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.3■■□□□ 1
SF3A1Q15459 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.29■■□□□ 1
SF3A1Q15459 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SF3A1Q15459 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms