Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC15.06■□□□□ 0
CDX1P47902 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.06■□□□□ 0
CDX1P47902 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.06■□□□□ 0
CDX1P47902 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
CDX1P47902 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
CDX1P47902 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
CDX1P47902 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
CDX1P47902 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC15.05■□□□□ 0
CDX1P47902 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.05■□□□□ 0
CDX1P47902 WIZP1-201ENST00000531444 2299 ntBASIC15.05■□□□□ 0
CDX1P47902 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.05■□□□□ 0
CDX1P47902 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
CDX1P47902 AC018695.7-201ENST00000624587 2492 ntBASIC15.05■□□□□ 0
CDX1P47902 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
CDX1P47902 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
CDX1P47902 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC15.05■□□□□ -0
CDX1P47902 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 AC211429.1-201ENST00000415277 523 ntBASIC15.05■□□□□ -0
CDX1P47902 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC15.05■□□□□ -0
CDX1P47902 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.05■□□□□ -0
CDX1P47902 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.05■□□□□ -0
CDX1P47902 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC15.05■□□□□ -0
CDX1P47902 DGCR10-201ENST00000609839 495 ntBASIC15.05■□□□□ -0
CDX1P47902 MIR6786-201ENST00000616843 113 ntBASIC15.05■□□□□ -0
CDX1P47902 ABBA01031674.1-201ENST00000635145 728 ntBASIC15.05■□□□□ -0
CDX1P47902 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.05■□□□□ -0
CDX1P47902 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.05■□□□□ -0
CDX1P47902 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.05■□□□□ -0
CDX1P47902 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC15.05■□□□□ -0
CDX1P47902 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.05■□□□□ -0
CDX1P47902 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CDX1P47902 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.04■□□□□ -0
CDX1P47902 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CDX1P47902 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
CDX1P47902 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.04■□□□□ -0
CDX1P47902 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
CDX1P47902 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC15.04■□□□□ -0
CDX1P47902 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CDX1P47902 AC087499.1-201ENST00000418141 1075 ntBASIC15.04■□□□□ -0
CDX1P47902 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.04■□□□□ -0
CDX1P47902 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC15.04■□□□□ -0
CDX1P47902 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.04■□□□□ -0
CDX1P47902 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.04■□□□□ -0
CDX1P47902 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC15.04■□□□□ -0
CDX1P47902 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.04■□□□□ -0
CDX1P47902 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.04■□□□□ -0
CDX1P47902 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC15.04■□□□□ -0
CDX1P47902 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 GLDC-219ENST00000640208 420 ntTSL 2 BASIC15.04■□□□□ -0
CDX1P47902 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.04■□□□□ -0
CDX1P47902 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
CDX1P47902 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CDX1P47902 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
CDX1P47902 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CDX1P47902 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CDX1P47902 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CDX1P47902 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
CDX1P47902 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CDX1P47902 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
CDX1P47902 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CDX1P47902 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CDX1P47902 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CDX1P47902 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.03■□□□□ -0
CDX1P47902 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.03■□□□□ -0
CDX1P47902 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms