Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HNF4AP41235 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.9■□□□□ 0.46
HNF4AP41235 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.9■□□□□ 0.46
HNF4AP41235 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HNF4AP41235 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
HNF4AP41235 AC092338.2-201ENST00000568827 1415 ntBASIC17.89■□□□□ 0.46
HNF4AP41235 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.46
HNF4AP41235 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
HNF4AP41235 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
HNF4AP41235 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.89■□□□□ 0.45
HNF4AP41235 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.89■□□□□ 0.45
HNF4AP41235 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
HNF4AP41235 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.89■□□□□ 0.45
HNF4AP41235 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.89■□□□□ 0.45
HNF4AP41235 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.89■□□□□ 0.45
HNF4AP41235 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 AC128688.1-201ENST00000487626 519 ntBASIC17.89■□□□□ 0.45
HNF4AP41235 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.89■□□□□ 0.45
HNF4AP41235 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
HNF4AP41235 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
HNF4AP41235 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.89■□□□□ 0.45
HNF4AP41235 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.89■□□□□ 0.45
HNF4AP41235 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HNF4AP41235 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HNF4AP41235 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.89■□□□□ 0.45
HNF4AP41235 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.88■□□□□ 0.45
HNF4AP41235 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
HNF4AP41235 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.88■□□□□ 0.45
HNF4AP41235 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.88■□□□□ 0.45
HNF4AP41235 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HNF4AP41235 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.88■□□□□ 0.45
HNF4AP41235 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
HNF4AP41235 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HNF4AP41235 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
HNF4AP41235 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.87■□□□□ 0.45
HNF4AP41235 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 AC211429.1-201ENST00000415277 523 ntBASIC17.87■□□□□ 0.45
HNF4AP41235 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.87■□□□□ 0.45
HNF4AP41235 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.87■□□□□ 0.45
HNF4AP41235 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HNF4AP41235 WWOX-216ENST00000569818 525 ntBASIC17.87■□□□□ 0.45
HNF4AP41235 AC010653.2-201ENST00000623505 997 ntBASIC17.87■□□□□ 0.45
HNF4AP41235 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.87■□□□□ 0.45
HNF4AP41235 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.87■□□□□ 0.45
HNF4AP41235 KRT8P7-201ENST00000533003 1432 ntBASIC17.87■□□□□ 0.45
HNF4AP41235 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
HNF4AP41235 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
HNF4AP41235 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.87■□□□□ 0.45
HNF4AP41235 AC036111.1-201ENST00000533973 1582 ntBASIC17.87■□□□□ 0.45
HNF4AP41235 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HNF4AP41235 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms