Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HLA-DQA1P01909 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
HLA-DQA1P01909 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
HLA-DQA1P01909 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.19
HLA-DQA1P01909 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
HLA-DQA1P01909 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 HARS-201ENST00000307633 1780 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 REXO1L9P-201ENST00000604264 2108 ntBASIC13.89□□□□□ -0.19
HLA-DQA1P01909 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 AP001094.4-201ENST00000579008 2176 ntBASIC13.89□□□□□ -0.19
HLA-DQA1P01909 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 AL391005.1-201ENST00000623953 2435 ntBASIC13.89□□□□□ -0.19
HLA-DQA1P01909 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HLA-DQA1P01909 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 PARP1-202ENST00000366792 553 ntTSL 3 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 AC026271.2-201ENST00000428091 497 ntBASIC13.88□□□□□ -0.19
HLA-DQA1P01909 KRT18P5-201ENST00000436075 1291 ntBASIC13.88□□□□□ -0.19
HLA-DQA1P01909 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 DBI-210ENST00000542275 757 ntTSL 5 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 UBE2DNL-204ENST00000602536 740 ntBASIC13.88□□□□□ -0.19
HLA-DQA1P01909 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 PP12613-201ENST00000424958 2230 ntBASIC13.88□□□□□ -0.19
HLA-DQA1P01909 POR-209ENST00000439269 1858 ntTSL 2 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
HLA-DQA1P01909 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.87□□□□□ -0.19
HLA-DQA1P01909 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms