Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AC024243.1-201ENST00000609234 778 ntBASIC21.38■■□□□ 1.01
CTDNEP1O95476 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 AC010240.3-201ENST00000607688 395 ntBASIC21.37■■□□□ 1.01
CTDNEP1O95476 AC012306.2-201ENST00000609350 630 ntBASIC21.37■■□□□ 1.01
CTDNEP1O95476 AL138966.2-201ENST00000621997 464 ntBASIC21.37■■□□□ 1.01
CTDNEP1O95476 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC21.37■■□□□ 1.01
CTDNEP1O95476 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CTDNEP1O95476 AL024508.2-201ENST00000607749 1894 ntBASIC21.37■■□□□ 1.01
CTDNEP1O95476 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CTDNEP1O95476 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CTDNEP1O95476 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
CTDNEP1O95476 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 ECEL1P3-201ENST00000427961 737 ntBASIC21.36■■□□□ 1.01
CTDNEP1O95476 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTDNEP1O95476 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.36■■□□□ 1.01
CTDNEP1O95476 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDNEP1O95476 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.35■■□□□ 1.01
CTDNEP1O95476 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CTDNEP1O95476 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.35■■□□□ 1.01
CTDNEP1O95476 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDNEP1O95476 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDNEP1O95476 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDNEP1O95476 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDNEP1O95476 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDNEP1O95476 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
CTDNEP1O95476 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDNEP1O95476 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.35■■□□□ 1.01
CTDNEP1O95476 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.35■■□□□ 1.01
CTDNEP1O95476 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 AC138028.4-201ENST00000564984 1845 ntBASIC21.34■■□□□ 1.01
CTDNEP1O95476 KRT18P22-201ENST00000402024 1347 ntBASIC21.34■■□□□ 1.01
CTDNEP1O95476 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.34■■□□□ 1.01
CTDNEP1O95476 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDNEP1O95476 AC010203.1-204ENST00000548782 407 ntBASIC21.34■■□□□ 1.01
CTDNEP1O95476 MIR3180-4-201ENST00000582223 153 ntBASIC21.34■■□□□ 1.01
CTDNEP1O95476 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms