Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC28.67■■■□□ 2.18
PCF11O94913 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC28.67■■■□□ 2.18
PCF11O94913 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC28.67■■■□□ 2.18
PCF11O94913 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC28.67■■■□□ 2.18
PCF11O94913 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC28.67■■■□□ 2.18
PCF11O94913 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC28.67■■■□□ 2.18
PCF11O94913 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC28.67■■■□□ 2.18
PCF11O94913 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 AL355385.1-201ENST00000606123 409 ntBASIC28.67■■■□□ 2.18
PCF11O94913 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC28.67■■■□□ 2.18
PCF11O94913 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC28.67■■■□□ 2.18
PCF11O94913 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 LINC01126-201ENST00000623515 1646 ntBASIC28.67■■■□□ 2.18
PCF11O94913 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
PCF11O94913 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
PCF11O94913 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC28.67■■■□□ 2.18
PCF11O94913 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC28.67■■■□□ 2.18
PCF11O94913 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
PCF11O94913 HLA-A-201ENST00000376802 1334 ntBASIC28.67■■■□□ 2.18
PCF11O94913 CCS-201ENST00000310190 942 ntTSL 5 BASIC28.67■■■□□ 2.18
PCF11O94913 MIR574-201ENST00000385209 96 ntBASIC28.67■■■□□ 2.18
PCF11O94913 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 AC005082.1-201ENST00000413042 2259 ntBASIC28.66■■■□□ 2.18
PCF11O94913 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 PENK-208ENST00000523051 772 ntTSL 5 BASIC28.66■■■□□ 2.18
PCF11O94913 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC28.66■■■□□ 2.18
PCF11O94913 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC28.66■■■□□ 2.18
PCF11O94913 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC28.66■■■□□ 2.18
PCF11O94913 AL138831.2-201ENST00000606564 490 ntBASIC28.66■■■□□ 2.18
PCF11O94913 NME4-212ENST00000621774 904 ntTSL 3 BASIC28.66■■■□□ 2.18
PCF11O94913 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC28.66■■■□□ 2.18
PCF11O94913 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
PCF11O94913 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC28.65■■■□□ 2.18
PCF11O94913 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
PCF11O94913 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
PCF11O94913 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC28.65■■■□□ 2.18
PCF11O94913 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
PCF11O94913 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
PCF11O94913 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
PCF11O94913 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC28.65■■■□□ 2.18
PCF11O94913 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC28.65■■■□□ 2.18
PCF11O94913 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC28.65■■■□□ 2.18
PCF11O94913 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC28.65■■■□□ 2.18
PCF11O94913 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC28.65■■■□□ 2.18
PCF11O94913 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC28.65■■■□□ 2.18
PCF11O94913 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC28.64■■■□□ 2.18
PCF11O94913 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC28.64■■■□□ 2.18
PCF11O94913 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC28.64■■■□□ 2.18
PCF11O94913 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCF11O94913 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCF11O94913 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
PCF11O94913 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCF11O94913 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCF11O94913 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC28.64■■■□□ 2.18
PCF11O94913 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC28.64■■■□□ 2.18
PCF11O94913 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
PCF11O94913 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC28.64■■■□□ 2.18
PCF11O94913 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.18
PCF11O94913 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC28.64■■■□□ 2.18
PCF11O94913 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC28.64■■■□□ 2.18
PCF11O94913 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
PCF11O94913 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC28.64■■■□□ 2.18
PCF11O94913 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
PCF11O94913 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC28.64■■■□□ 2.17
PCF11O94913 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC28.64■■■□□ 2.17
PCF11O94913 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
PCF11O94913 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 MEG3-211ENST00000452514 461 ntTSL 3 BASIC28.63■■■□□ 2.17
PCF11O94913 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC28.63■■■□□ 2.17
PCF11O94913 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC28.63■■■□□ 2.17
PCF11O94913 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
PCF11O94913 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
PCF11O94913 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PCF11O94913 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
PCF11O94913 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC28.62■■■□□ 2.17
PCF11O94913 AC092865.5-201ENST00000545435 363 ntBASIC28.62■■■□□ 2.17
PCF11O94913 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PCF11O94913 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
PCF11O94913 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC28.62■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms