Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CACNA1FO60840 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC23.14■■□□□ 1.29
CACNA1FO60840 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC23.14■■□□□ 1.29
CACNA1FO60840 CIB2-208ENST00000560618 804 ntTSL 2 BASIC23.14■■□□□ 1.29
CACNA1FO60840 AC074051.2-201ENST00000565115 352 ntBASIC23.14■■□□□ 1.29
CACNA1FO60840 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CACNA1FO60840 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC23.14■■□□□ 1.29
CACNA1FO60840 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CACNA1FO60840 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC23.14■■□□□ 1.29
CACNA1FO60840 KRT8P47-201ENST00000604727 1398 ntBASIC23.14■■□□□ 1.29
CACNA1FO60840 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC23.13■■□□□ 1.29
CACNA1FO60840 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 PHGDH-209ENST00000641074 1780 ntBASIC23.13■■□□□ 1.29
CACNA1FO60840 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
CACNA1FO60840 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC23.13■■□□□ 1.29
CACNA1FO60840 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC23.13■■□□□ 1.29
CACNA1FO60840 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC23.13■■□□□ 1.29
CACNA1FO60840 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CACNA1FO60840 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC23.13■■□□□ 1.29
CACNA1FO60840 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC23.13■■□□□ 1.29
CACNA1FO60840 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC23.12■■□□□ 1.29
CACNA1FO60840 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC23.12■■□□□ 1.29
CACNA1FO60840 VPS72-207ENST00000640458 689 ntTSL 5 BASIC23.12■■□□□ 1.29
CACNA1FO60840 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC23.12■■□□□ 1.29
CACNA1FO60840 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC23.12■■□□□ 1.29
CACNA1FO60840 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC23.12■■□□□ 1.29
CACNA1FO60840 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC23.12■■□□□ 1.29
CACNA1FO60840 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC23.12■■□□□ 1.29
CACNA1FO60840 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
CACNA1FO60840 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC23.12■■□□□ 1.29
CACNA1FO60840 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC23.12■■□□□ 1.29
CACNA1FO60840 AC090164.3-201ENST00000610780 2143 ntBASIC23.12■■□□□ 1.29
CACNA1FO60840 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
CACNA1FO60840 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CACNA1FO60840 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC23.11■■□□□ 1.29
CACNA1FO60840 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC23.11■■□□□ 1.29
CACNA1FO60840 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC23.11■■□□□ 1.29
CACNA1FO60840 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC23.11■■□□□ 1.29
CACNA1FO60840 BET1L-206ENST00000486280 665 ntTSL 3 BASIC23.11■■□□□ 1.29
CACNA1FO60840 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC23.11■■□□□ 1.29
CACNA1FO60840 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC23.11■■□□□ 1.29
CACNA1FO60840 AC132938.6-201ENST00000623828 1655 ntBASIC23.11■■□□□ 1.29
CACNA1FO60840 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CACNA1FO60840 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC23.11■■□□□ 1.29
CACNA1FO60840 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC23.11■■□□□ 1.29
CACNA1FO60840 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CACNA1FO60840 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC23.1■■□□□ 1.29
CACNA1FO60840 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC23.1■■□□□ 1.29
CACNA1FO60840 GUSBP12-201ENST00000513727 720 ntBASIC23.1■■□□□ 1.29
CACNA1FO60840 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC23.1■■□□□ 1.29
CACNA1FO60840 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC23.1■■□□□ 1.29
CACNA1FO60840 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC23.1■■□□□ 1.29
CACNA1FO60840 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC23.1■■□□□ 1.29
CACNA1FO60840 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC23.1■■□□□ 1.29
CACNA1FO60840 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CACNA1FO60840 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC23.1■■□□□ 1.29
CACNA1FO60840 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CACNA1FO60840 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CACNA1FO60840 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms