Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.02■□□□□ 0.63
VPS28Q9UK41 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VPS28Q9UK41 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 AC112907.2-201ENST00000448639 330 ntBASIC19.01■□□□□ 0.63
VPS28Q9UK41 AL671277.2-201ENST00000458060 996 ntBASIC19.01■□□□□ 0.63
VPS28Q9UK41 RASA4DP-201ENST00000460726 1199 ntBASIC19.01■□□□□ 0.63
VPS28Q9UK41 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.01■□□□□ 0.63
VPS28Q9UK41 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VPS28Q9UK41 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19■□□□□ 0.63
VPS28Q9UK41 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19■□□□□ 0.63
VPS28Q9UK41 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19■□□□□ 0.63
VPS28Q9UK41 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19■□□□□ 0.63
VPS28Q9UK41 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19■□□□□ 0.63
VPS28Q9UK41 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19■□□□□ 0.63
VPS28Q9UK41 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19■□□□□ 0.63
VPS28Q9UK41 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19■□□□□ 0.63
VPS28Q9UK41 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19■□□□□ 0.63
VPS28Q9UK41 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19■□□□□ 0.63
VPS28Q9UK41 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19■□□□□ 0.63
VPS28Q9UK41 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 HCG11-201ENST00000411553 5696 ntBASIC19■□□□□ 0.63
VPS28Q9UK41 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19■□□□□ 0.63
VPS28Q9UK41 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VPS28Q9UK41 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
VPS28Q9UK41 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS28Q9UK41 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS28Q9UK41 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS28Q9UK41 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS28Q9UK41 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS28Q9UK41 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS28Q9UK41 AL031133.1-201ENST00000406807 723 ntBASIC18.99■□□□□ 0.63
VPS28Q9UK41 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS28Q9UK41 AC104390.1-201ENST00000555663 520 ntBASIC18.99■□□□□ 0.63
VPS28Q9UK41 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS28Q9UK41 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS28Q9UK41 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS28Q9UK41 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 CROCCP3-202ENST00000420820 1947 ntBASIC18.98■□□□□ 0.63
VPS28Q9UK41 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS28Q9UK41 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS28Q9UK41 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms