Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 AIRN-201ENST00000601203 4374 ntBASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CLCF1Q9UBD9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 TSPY22P-201ENST00000427496 604 ntBASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 KRT18P48-201ENST00000434763 852 ntBASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 AP003733.1-201ENST00000491725 852 ntBASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 AC092119.3-201ENST00000612618 583 ntBASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLCF1Q9UBD9 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.39■□□□□ 0.22
CLCF1Q9UBD9 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CLCF1Q9UBD9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 AC112777.1-201ENST00000540175 1423 ntBASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 Z83836.1-201ENST00000624605 1642 ntBASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 MIR149-201ENST00000384879 89 ntBASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 CHCHD2P8-201ENST00000429873 447 ntBASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 AP002383.4-201ENST00000442518 975 ntBASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 AC024563.2-201ENST00000603282 481 ntBASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 AL390719.2-201ENST00000606993 987 ntBASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.39■□□□□ 0.21
CLCF1Q9UBD9 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLCF1Q9UBD9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms