Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 KRT18P38-201ENST00000449496 1282 ntBASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 RASA4DP-201ENST00000460726 1199 ntBASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 AC010240.3-201ENST00000607688 395 ntBASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 KRT8P50-201ENST00000562022 1438 ntBASIC18.32■□□□□ 0.52
TRIM39Q9HCM9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 MYC-208ENST00000641036 567 ntBASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 AC112777.1-201ENST00000540175 1423 ntBASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM39Q9HCM9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 ARMC10P1-201ENST00000313754 855 ntBASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 SPDYE15P-201ENST00000424157 909 ntBASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM39Q9HCM9 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 CROCCP3-202ENST00000420820 1947 ntBASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 AC112907.2-201ENST00000448639 330 ntBASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 AC087388.1-201ENST00000571370 1112 ntBASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 AL157888.1-201ENST00000631930 593 ntBASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM39Q9HCM9 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms