Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 AC011840.4-201ENST00000578471 627 ntBASIC18.07■□□□□ 0.48
CFAP54Q96N23 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CFAP54Q96N23 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.06■□□□□ 0.48
CFAP54Q96N23 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 AC099778.1-201ENST00000568593 1911 ntBASIC18.06■□□□□ 0.48
CFAP54Q96N23 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.06■□□□□ 0.48
CFAP54Q96N23 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.06■□□□□ 0.48
CFAP54Q96N23 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.06■□□□□ 0.48
CFAP54Q96N23 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CFAP54Q96N23 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CFAP54Q96N23 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.06■□□□□ 0.48
CFAP54Q96N23 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.06■□□□□ 0.48
CFAP54Q96N23 C20orf181-201ENST00000623918 480 ntBASIC18.06■□□□□ 0.48
CFAP54Q96N23 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CFAP54Q96N23 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AL078644.1-201ENST00000609881 752 ntBASIC18.05■□□□□ 0.48
CFAP54Q96N23 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CFAP54Q96N23 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CFAP54Q96N23 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.04■□□□□ 0.48
CFAP54Q96N23 AC008735.5-201ENST00000623544 497 ntBASIC18.04■□□□□ 0.48
CFAP54Q96N23 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CFAP54Q96N23 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 AP003733.1-201ENST00000491725 852 ntBASIC18.03■□□□□ 0.48
CFAP54Q96N23 AC010240.3-201ENST00000607688 395 ntBASIC18.03■□□□□ 0.48
CFAP54Q96N23 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CFAP54Q96N23 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CFAP54Q96N23 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms