Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC140Q96MF4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 MIR149-201ENST00000384879 89 ntBASIC14.29□□□□□ -0.12
CCDC140Q96MF4 AC113347.1-201ENST00000413321 391 ntBASIC14.29□□□□□ -0.12
CCDC140Q96MF4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 GRAMD4P1-201ENST00000435181 1110 ntBASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 SEC1P-202ENST00000473944 940 ntBASIC14.29□□□□□ -0.12
CCDC140Q96MF4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 AC024243.1-201ENST00000609234 778 ntBASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 AC009102.3-201ENST00000623118 1491 ntBASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 AL162741.1-201ENST00000565563 1558 ntBASIC14.29□□□□□ -0.12
CCDC140Q96MF4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC140Q96MF4 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 AP000523.1-201ENST00000398242 1049 ntBASIC14.28□□□□□ -0.12
CCDC140Q96MF4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 SDHAP2-201ENST00000455183 2001 ntBASIC14.28□□□□□ -0.12
CCDC140Q96MF4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC140Q96MF4 AC010240.3-201ENST00000607688 395 ntBASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms