Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.79■□□□□ 0.44
VPS33AQ96AX1 AC112777.1-201ENST00000540175 1423 ntBASIC17.79■□□□□ 0.44
VPS33AQ96AX1 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS33AQ96AX1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS33AQ96AX1 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS33AQ96AX1 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VPS33AQ96AX1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS33AQ96AX1 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 AC134043.2-201ENST00000624206 2238 ntBASIC17.78■□□□□ 0.44
VPS33AQ96AX1 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 AC239809.2-201ENST00000415381 517 ntBASIC17.78■□□□□ 0.44
VPS33AQ96AX1 HLA-L-209ENST00000420110 1011 ntBASIC17.78■□□□□ 0.44
VPS33AQ96AX1 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 RNA5SP413-201ENST00000516373 109 ntBASIC17.78■□□□□ 0.44
VPS33AQ96AX1 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 AL445675.2-201ENST00000620291 557 ntBASIC17.78■□□□□ 0.44
VPS33AQ96AX1 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 KRT8P45-201ENST00000414328 1447 ntBASIC17.78■□□□□ 0.44
VPS33AQ96AX1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.78■□□□□ 0.44
VPS33AQ96AX1 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS33AQ96AX1 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 PRSS44-201ENST00000515154 1146 ntBASIC17.77■□□□□ 0.44
VPS33AQ96AX1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS33AQ96AX1 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS33AQ96AX1 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS33AQ96AX1 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.77■□□□□ 0.43
VPS33AQ96AX1 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VPS33AQ96AX1 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.43
VPS33AQ96AX1 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 AC004980.1-204ENST00000429707 299 ntBASIC17.76■□□□□ 0.43
VPS33AQ96AX1 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 AC026366.1-201ENST00000488803 879 ntBASIC17.76■□□□□ 0.43
VPS33AQ96AX1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 REXO1L9P-201ENST00000604264 2108 ntBASIC17.76■□□□□ 0.43
VPS33AQ96AX1 AC131212.4-201ENST00000623606 975 ntBASIC17.76■□□□□ 0.43
VPS33AQ96AX1 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
VPS33AQ96AX1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms