Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CLRN3Q8NCR9 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 AC099791.2-201ENST00000605725 427 ntBASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 FAM21FP-204ENST00000608637 956 ntBASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 AC132872.4-202ENST00000622924 2756 ntBASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 AC026691.1-201ENST00000602502 2017 ntBASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC14.75□□□□□ -0.05
CLRN3Q8NCR9 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 POU5F1P4-201ENST00000413175 1085 ntBASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 SRR-208ENST00000576848 588 ntTSL 4 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 AC007950.2-201ENST00000615045 2347 ntBASIC14.74□□□□□ -0.05
CLRN3Q8NCR9 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC14.73□□□□□ -0.05
CLRN3Q8NCR9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms