Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RAE1P78406 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.54■□□□□ 0.4
RAE1P78406 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.54■□□□□ 0.4
RAE1P78406 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RAE1P78406 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RAE1P78406 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RAE1P78406 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
RAE1P78406 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.54■□□□□ 0.4
RAE1P78406 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.54■□□□□ 0.4
RAE1P78406 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RAE1P78406 KRT8P7-201ENST00000533003 1432 ntBASIC17.54■□□□□ 0.4
RAE1P78406 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RAE1P78406 GMCL1P1-201ENST00000463439 1581 ntBASIC17.53■□□□□ 0.4
RAE1P78406 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.53■□□□□ 0.4
RAE1P78406 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 REXO1L9P-201ENST00000604264 2108 ntBASIC17.53■□□□□ 0.4
RAE1P78406 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.53■□□□□ 0.4
RAE1P78406 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.53■□□□□ 0.4
RAE1P78406 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.53■□□□□ 0.4
RAE1P78406 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 AC008764.6-201ENST00000595909 2069 ntBASIC17.53■□□□□ 0.4
RAE1P78406 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
RAE1P78406 MIR149-201ENST00000384879 89 ntBASIC17.53■□□□□ 0.4
RAE1P78406 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.53■□□□□ 0.4
RAE1P78406 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.53■□□□□ 0.4
RAE1P78406 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.53■□□□□ 0.4
RAE1P78406 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
RAE1P78406 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.53■□□□□ 0.4
RAE1P78406 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RAE1P78406 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
RAE1P78406 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
RAE1P78406 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
RAE1P78406 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 AC009102.3-201ENST00000623118 1491 ntBASIC17.52■□□□□ 0.4
RAE1P78406 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
RAE1P78406 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.52■□□□□ 0.4
RAE1P78406 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.52■□□□□ 0.4
RAE1P78406 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.52■□□□□ 0.4
RAE1P78406 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.52■□□□□ 0.4
RAE1P78406 PHGDH-209ENST00000641074 1780 ntBASIC17.52■□□□□ 0.4
RAE1P78406 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RAE1P78406 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.52■□□□□ 0.4
RAE1P78406 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
RAE1P78406 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
RAE1P78406 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RAE1P78406 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.52■□□□□ 0.39
RAE1P78406 AC005332.8-201ENST00000622750 2735 ntBASIC17.52■□□□□ 0.39
RAE1P78406 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
RAE1P78406 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
RAE1P78406 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.52■□□□□ 0.39
RAE1P78406 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 MMP23A-201ENST00000234610 1017 ntBASIC17.51■□□□□ 0.39
RAE1P78406 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
RAE1P78406 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.51■□□□□ 0.39
RAE1P78406 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
RAE1P78406 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
RAE1P78406 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RAE1P78406 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms