Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.15■□□□□ 0.5
PKNOX1P55347 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 AC008764.6-201ENST00000595909 2069 ntBASIC18.15■□□□□ 0.5
PKNOX1P55347 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PKNOX1P55347 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.15■□□□□ 0.5
PKNOX1P55347 FAM207BP-201ENST00000447172 505 ntBASIC18.15■□□□□ 0.5
PKNOX1P55347 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.15■□□□□ 0.5
PKNOX1P55347 RPPH1-201ENST00000516869 333 ntBASIC18.15■□□□□ 0.5
PKNOX1P55347 CD99P1-205ENST00000527459 561 ntBASIC18.15■□□□□ 0.5
PKNOX1P55347 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PKNOX1P55347 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.15■□□□□ 0.5
PKNOX1P55347 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.15■□□□□ 0.5
PKNOX1P55347 AC130371.2-201ENST00000619443 611 ntBASIC18.15■□□□□ 0.5
PKNOX1P55347 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.15■□□□□ 0.5
PKNOX1P55347 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PKNOX1P55347 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.14■□□□□ 0.5
PKNOX1P55347 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.14■□□□□ 0.5
PKNOX1P55347 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
PKNOX1P55347 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.14■□□□□ 0.5
PKNOX1P55347 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
PKNOX1P55347 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.14■□□□□ 0.49
PKNOX1P55347 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 AC008040.2-201ENST00000461049 708 ntBASIC18.14■□□□□ 0.49
PKNOX1P55347 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.14■□□□□ 0.49
PKNOX1P55347 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.14■□□□□ 0.49
PKNOX1P55347 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.14■□□□□ 0.49
PKNOX1P55347 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
PKNOX1P55347 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PKNOX1P55347 RCC2P3-201ENST00000418112 1537 ntBASIC18.13■□□□□ 0.49
PKNOX1P55347 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.13■□□□□ 0.49
PKNOX1P55347 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
PKNOX1P55347 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.13■□□□□ 0.49
PKNOX1P55347 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
PKNOX1P55347 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.13■□□□□ 0.49
PKNOX1P55347 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.13■□□□□ 0.49
PKNOX1P55347 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
PKNOX1P55347 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PKNOX1P55347 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
PKNOX1P55347 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
PKNOX1P55347 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PKNOX1P55347 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 AC106820.2-201ENST00000563775 3264 ntBASIC18.12■□□□□ 0.49
PKNOX1P55347 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
PKNOX1P55347 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
PKNOX1P55347 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PKNOX1P55347 BCL2-203ENST00000589955 5011 ntBASIC18.12■□□□□ 0.49
PKNOX1P55347 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.12■□□□□ 0.49
PKNOX1P55347 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 AC011506.1-201ENST00000474329 610 ntBASIC18.12■□□□□ 0.49
PKNOX1P55347 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.12■□□□□ 0.49
PKNOX1P55347 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.12■□□□□ 0.49
PKNOX1P55347 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.12■□□□□ 0.49
PKNOX1P55347 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.12■□□□□ 0.49
PKNOX1P55347 MIR6786-201ENST00000616843 113 ntBASIC18.12■□□□□ 0.49
PKNOX1P55347 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PKNOX1P55347 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.12■□□□□ 0.49
PKNOX1P55347 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.12■□□□□ 0.49
PKNOX1P55347 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.12■□□□□ 0.49
PKNOX1P55347 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.12■□□□□ 0.49
PKNOX1P55347 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
PKNOX1P55347 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.12■□□□□ 0.49
PKNOX1P55347 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
PKNOX1P55347 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms