Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC25.5■■□□□ 1.67
MSH6P52701 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 FUOM-202ENST00000368551 628 ntTSL 3 BASIC25.5■■□□□ 1.67
MSH6P52701 PON3-203ENST00000427422 894 ntTSL 3 BASIC25.5■■□□□ 1.67
MSH6P52701 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC25.5■■□□□ 1.67
MSH6P52701 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC25.5■■□□□ 1.67
MSH6P52701 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC25.5■■□□□ 1.67
MSH6P52701 RPS29-206ENST00000557111 488 ntTSL 2 BASIC25.5■■□□□ 1.67
MSH6P52701 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC25.5■■□□□ 1.67
MSH6P52701 AC092364.2-202ENST00000597012 1073 ntBASIC25.5■■□□□ 1.67
MSH6P52701 AC107918.4-202ENST00000641623 219 ntBASIC25.5■■□□□ 1.67
MSH6P52701 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
MSH6P52701 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC25.5■■□□□ 1.67
MSH6P52701 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC25.49■■□□□ 1.67
MSH6P52701 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
MSH6P52701 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
MSH6P52701 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
MSH6P52701 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC25.49■■□□□ 1.67
MSH6P52701 AL035633.1-201ENST00000406139 838 ntBASIC25.49■■□□□ 1.67
MSH6P52701 AC009947.1-201ENST00000444350 727 ntBASIC25.49■■□□□ 1.67
MSH6P52701 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC25.49■■□□□ 1.67
MSH6P52701 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC25.49■■□□□ 1.67
MSH6P52701 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC25.49■■□□□ 1.67
MSH6P52701 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
MSH6P52701 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC25.48■■□□□ 1.67
MSH6P52701 LINC01521-201ENST00000504184 1943 ntBASIC25.48■■□□□ 1.67
MSH6P52701 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
MSH6P52701 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH6P52701 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
MSH6P52701 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC25.48■■□□□ 1.67
MSH6P52701 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC25.48■■□□□ 1.67
MSH6P52701 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC25.48■■□□□ 1.67
MSH6P52701 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH6P52701 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH6P52701 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH6P52701 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH6P52701 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC25.48■■□□□ 1.67
MSH6P52701 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
MSH6P52701 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC25.47■■□□□ 1.67
MSH6P52701 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH6P52701 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH6P52701 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
MSH6P52701 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC25.47■■□□□ 1.67
MSH6P52701 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC25.47■■□□□ 1.67
MSH6P52701 COPE-211ENST00000600932 1144 ntTSL 5 BASIC25.47■■□□□ 1.67
MSH6P52701 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC25.47■■□□□ 1.67
MSH6P52701 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC25.47■■□□□ 1.67
MSH6P52701 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH6P52701 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC25.47■■□□□ 1.67
MSH6P52701 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
MSH6P52701 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC25.47■■□□□ 1.67
MSH6P52701 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
MSH6P52701 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
MSH6P52701 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
MSH6P52701 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC25.46■■□□□ 1.67
MSH6P52701 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC25.46■■□□□ 1.67
MSH6P52701 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
MSH6P52701 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC25.46■■□□□ 1.67
MSH6P52701 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC25.46■■□□□ 1.67
MSH6P52701 YBX1P5-201ENST00000509441 847 ntBASIC25.46■■□□□ 1.67
MSH6P52701 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC25.46■■□□□ 1.67
MSH6P52701 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC25.46■■□□□ 1.67
MSH6P52701 SNHG9-202ENST00000564014 471 ntBASIC25.46■■□□□ 1.67
MSH6P52701 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 ORC5-208ENST00000626700 344 ntTSL 3 BASIC25.46■■□□□ 1.67
MSH6P52701 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC25.46■■□□□ 1.67
MSH6P52701 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 KRT8P50-201ENST00000562022 1438 ntBASIC25.46■■□□□ 1.67
MSH6P52701 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
MSH6P52701 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
MSH6P52701 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms