Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDX1P47902 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.08■□□□□ 0.01
CDX1P47902 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDX1P47902 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDX1P47902 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CDX1P47902 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.08■□□□□ 0
CDX1P47902 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.08■□□□□ 0
CDX1P47902 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.08■□□□□ 0
CDX1P47902 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
CDX1P47902 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC15.08■□□□□ 0
CDX1P47902 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC15.08■□□□□ 0
CDX1P47902 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC15.08■□□□□ 0
CDX1P47902 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.08■□□□□ 0
CDX1P47902 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.08■□□□□ 0
CDX1P47902 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.08■□□□□ 0
CDX1P47902 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.08■□□□□ 0
CDX1P47902 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC15.08■□□□□ 0
CDX1P47902 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDX1P47902 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CDX1P47902 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CDX1P47902 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CDX1P47902 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
CDX1P47902 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
CDX1P47902 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.07■□□□□ 0
CDX1P47902 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
CDX1P47902 AC004980.1-204ENST00000429707 299 ntBASIC15.07■□□□□ 0
CDX1P47902 RBM17P1-201ENST00000453646 1190 ntBASIC15.07■□□□□ 0
CDX1P47902 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC15.07■□□□□ 0
CDX1P47902 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.07■□□□□ 0
CDX1P47902 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC15.07■□□□□ 0
CDX1P47902 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CDX1P47902 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC15.07■□□□□ 0
CDX1P47902 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC15.07■□□□□ 0
CDX1P47902 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CDX1P47902 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC15.07■□□□□ 0
CDX1P47902 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
CDX1P47902 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC15.07■□□□□ 0
CDX1P47902 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDX1P47902 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.07■□□□□ 0
CDX1P47902 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.06■□□□□ 0
CDX1P47902 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
CDX1P47902 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
CDX1P47902 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 MMP23A-201ENST00000234610 1017 ntBASIC15.06■□□□□ 0
CDX1P47902 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.06■□□□□ 0
CDX1P47902 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC15.06■□□□□ 0
CDX1P47902 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 TSPY15P-201ENST00000457163 923 ntBASIC15.06■□□□□ 0
CDX1P47902 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC15.06■□□□□ 0
CDX1P47902 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC15.06■□□□□ 0
CDX1P47902 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC15.06■□□□□ 0
CDX1P47902 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC15.06■□□□□ 0
CDX1P47902 GRAMD4P8-201ENST00000605465 1115 ntBASIC15.06■□□□□ 0
CDX1P47902 LINC01023-201ENST00000606054 436 ntBASIC15.06■□□□□ 0
CDX1P47902 HLA-A-209ENST00000638375 975 ntBASIC15.06■□□□□ 0
CDX1P47902 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms