Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.06■□□□□ 0.32
NKX2-2O95096 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX2-2O95096 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX2-2O95096 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.06■□□□□ 0.32
NKX2-2O95096 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
NKX2-2O95096 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX2-2O95096 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX2-2O95096 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
NKX2-2O95096 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX2-2O95096 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX2-2O95096 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX2-2O95096 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX2-2O95096 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX2-2O95096 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX2-2O95096 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX2-2O95096 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX2-2O95096 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.05■□□□□ 0.32
NKX2-2O95096 GMCL1P1-201ENST00000463439 1581 ntBASIC17.05■□□□□ 0.32
NKX2-2O95096 ABALON-201ENST00000629058 1903 ntBASIC17.05■□□□□ 0.32
NKX2-2O95096 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX2-2O95096 AC093677.2-201ENST00000600169 1863 ntBASIC17.05■□□□□ 0.32
NKX2-2O95096 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
NKX2-2O95096 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 ESPNP-201ENST00000270691 2015 ntBASIC17.04■□□□□ 0.32
NKX2-2O95096 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 AL390961.4-201ENST00000623958 2535 ntBASIC17.04■□□□□ 0.32
NKX2-2O95096 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.04■□□□□ 0.32
NKX2-2O95096 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 AC135776.1-201ENST00000319817 2481 ntBASIC17.04■□□□□ 0.32
NKX2-2O95096 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 AC010203.1-204ENST00000548782 407 ntBASIC17.04■□□□□ 0.32
NKX2-2O95096 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.04■□□□□ 0.32
NKX2-2O95096 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.04■□□□□ 0.32
NKX2-2O95096 AC005363.2-201ENST00000618631 242 ntBASIC17.04■□□□□ 0.32
NKX2-2O95096 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.04■□□□□ 0.32
NKX2-2O95096 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
NKX2-2O95096 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.04■□□□□ 0.32
NKX2-2O95096 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.04■□□□□ 0.32
NKX2-2O95096 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX2-2O95096 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
NKX2-2O95096 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.03■□□□□ 0.32
NKX2-2O95096 AC113347.1-201ENST00000413321 391 ntBASIC17.03■□□□□ 0.32
NKX2-2O95096 LIN28AP1-201ENST00000429574 405 ntBASIC17.03■□□□□ 0.32
NKX2-2O95096 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.03■□□□□ 0.32
NKX2-2O95096 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.03■□□□□ 0.32
NKX2-2O95096 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.03■□□□□ 0.32
NKX2-2O95096 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 MIR3917-201ENST00000580971 93 ntBASIC17.03■□□□□ 0.32
NKX2-2O95096 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.03■□□□□ 0.32
NKX2-2O95096 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.03■□□□□ 0.32
NKX2-2O95096 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX2-2O95096 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.03■□□□□ 0.32
NKX2-2O95096 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX2-2O95096 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX2-2O95096 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
NKX2-2O95096 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX2-2O95096 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
NKX2-2O95096 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX2-2O95096 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX2-2O95096 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX2-2O95096 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms