Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
SEMA3DO95025 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.71■□□□□ 0.43
SEMA3DO95025 AC104581.1-202ENST00000635932 2618 ntBASIC17.71■□□□□ 0.43
SEMA3DO95025 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.71■□□□□ 0.43
SEMA3DO95025 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
SEMA3DO95025 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.71■□□□□ 0.42
SEMA3DO95025 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.71■□□□□ 0.42
SEMA3DO95025 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.71■□□□□ 0.42
SEMA3DO95025 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.71■□□□□ 0.42
SEMA3DO95025 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SEMA3DO95025 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SEMA3DO95025 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
SEMA3DO95025 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
SEMA3DO95025 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.7■□□□□ 0.42
SEMA3DO95025 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.7■□□□□ 0.42
SEMA3DO95025 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.7■□□□□ 0.42
SEMA3DO95025 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 TSPY15P-201ENST00000457163 923 ntBASIC17.7■□□□□ 0.42
SEMA3DO95025 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.7■□□□□ 0.42
SEMA3DO95025 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.7■□□□□ 0.42
SEMA3DO95025 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.7■□□□□ 0.42
SEMA3DO95025 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.7■□□□□ 0.42
SEMA3DO95025 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.7■□□□□ 0.42
SEMA3DO95025 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.7■□□□□ 0.42
SEMA3DO95025 CR769767.2-201ENST00000622735 460 ntBASIC17.7■□□□□ 0.42
SEMA3DO95025 AC066615.1-201ENST00000640911 628 ntBASIC17.7■□□□□ 0.42
SEMA3DO95025 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.7■□□□□ 0.42
SEMA3DO95025 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.7■□□□□ 0.42
SEMA3DO95025 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SEMA3DO95025 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.69■□□□□ 0.42
SEMA3DO95025 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SEMA3DO95025 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SEMA3DO95025 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
SEMA3DO95025 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 AC106820.2-201ENST00000563775 3264 ntBASIC17.69■□□□□ 0.42
SEMA3DO95025 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.69■□□□□ 0.42
SEMA3DO95025 MMP23A-201ENST00000234610 1017 ntBASIC17.69■□□□□ 0.42
SEMA3DO95025 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.69■□□□□ 0.42
SEMA3DO95025 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.69■□□□□ 0.42
SEMA3DO95025 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.69■□□□□ 0.42
SEMA3DO95025 NAPSB-206ENST00000562112 1266 ntBASIC17.69■□□□□ 0.42
SEMA3DO95025 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 KRT8P50-201ENST00000562022 1438 ntBASIC17.69■□□□□ 0.42
SEMA3DO95025 BICD1-207ENST00000551848 1962 ntBASIC17.69■□□□□ 0.42
SEMA3DO95025 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.69■□□□□ 0.42
SEMA3DO95025 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SEMA3DO95025 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SEMA3DO95025 AC020916.1-201ENST00000587762 1774 ntBASIC17.68■□□□□ 0.42
SEMA3DO95025 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 AL596275.1-201ENST00000423464 877 ntBASIC17.68■□□□□ 0.42
SEMA3DO95025 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 AC010947.1-201ENST00000623454 693 ntBASIC17.68■□□□□ 0.42
SEMA3DO95025 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SEMA3DO95025 AC135050.7-201ENST00000624508 2218 ntBASIC17.68■□□□□ 0.42
SEMA3DO95025 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SEMA3DO95025 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SEMA3DO95025 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SEMA3DO95025 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms