Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HMGN4O00479 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HMGN4O00479 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
HMGN4O00479 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.34
HMGN4O00479 AC008764.6-201ENST00000595909 2069 ntBASIC17.2■□□□□ 0.34
HMGN4O00479 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGN4O00479 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.2■□□□□ 0.34
HMGN4O00479 AC099343.3-201ENST00000605834 2503 ntBASIC17.2■□□□□ 0.34
HMGN4O00479 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGN4O00479 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HMGN4O00479 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HMGN4O00479 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 SLC25A1P2-201ENST00000430693 912 ntBASIC17.2■□□□□ 0.34
HMGN4O00479 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGN4O00479 AP003041.3-201ENST00000527151 707 ntBASIC17.2■□□□□ 0.34
HMGN4O00479 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGN4O00479 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGN4O00479 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGN4O00479 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.2■□□□□ 0.34
HMGN4O00479 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.2■□□□□ 0.34
HMGN4O00479 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 REXO1L9P-201ENST00000604264 2108 ntBASIC17.2■□□□□ 0.34
HMGN4O00479 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HMGN4O00479 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.2■□□□□ 0.34
HMGN4O00479 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HMGN4O00479 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
HMGN4O00479 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGN4O00479 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGN4O00479 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGN4O00479 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGN4O00479 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGN4O00479 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HMGN4O00479 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGN4O00479 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGN4O00479 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.19■□□□□ 0.34
HMGN4O00479 AL353719.1-201ENST00000566847 864 ntBASIC17.19■□□□□ 0.34
HMGN4O00479 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 MIR4785-201ENST00000585005 73 ntBASIC17.19■□□□□ 0.34
HMGN4O00479 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HMGN4O00479 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.19■□□□□ 0.34
HMGN4O00479 AP000525.1-201ENST00000608286 694 ntBASIC17.19■□□□□ 0.34
HMGN4O00479 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.19■□□□□ 0.34
HMGN4O00479 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HMGN4O00479 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HMGN4O00479 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HMGN4O00479 AC067852.2-201ENST00000590513 2313 ntBASIC17.19■□□□□ 0.34
HMGN4O00479 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HMGN4O00479 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HMGN4O00479 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 PCDHB18P-201ENST00000524813 2368 ntBASIC17.18■□□□□ 0.34
HMGN4O00479 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.18■□□□□ 0.34
HMGN4O00479 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 AL390955.1-201ENST00000428694 934 ntBASIC17.18■□□□□ 0.34
HMGN4O00479 TSPY17P-201ENST00000450329 467 ntBASIC17.18■□□□□ 0.34
HMGN4O00479 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.18■□□□□ 0.34
HMGN4O00479 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGN4O00479 FITM1-202ENST00000559294 800 ntBASIC17.18■□□□□ 0.34
HMGN4O00479 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGN4O00479 TMEM191A-211ENST00000637163 1067 ntBASIC17.18■□□□□ 0.34
HMGN4O00479 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
HMGN4O00479 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGN4O00479 GMCL1P1-201ENST00000463439 1581 ntBASIC17.18■□□□□ 0.34
HMGN4O00479 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGN4O00479 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms