Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL358472.5-202ENST00000641448 1267 ntBASIC14.28□□□□□ -0.12
COL6A5A8TX70 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 ACTG1P14-201ENST00000446382 1122 ntBASIC14.28□□□□□ -0.12
COL6A5A8TX70 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.28□□□□□ -0.12
COL6A5A8TX70 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL6A5A8TX70 GPR89P-201ENST00000407924 1495 ntBASIC14.28□□□□□ -0.12
COL6A5A8TX70 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC14.28□□□□□ -0.12
COL6A5A8TX70 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC14.27□□□□□ -0.12
COL6A5A8TX70 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC14.27□□□□□ -0.12
COL6A5A8TX70 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
COL6A5A8TX70 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
COL6A5A8TX70 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC14.27□□□□□ -0.12
COL6A5A8TX70 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A5A8TX70 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
COL6A5A8TX70 AC125634.1-201ENST00000438758 1403 ntBASIC14.27□□□□□ -0.12
COL6A5A8TX70 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A5A8TX70 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL6A5A8TX70 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 TFAMP1-201ENST00000412727 736 ntBASIC14.27□□□□□ -0.13
COL6A5A8TX70 ARSEP1-201ENST00000420443 635 ntBASIC14.27□□□□□ -0.13
COL6A5A8TX70 CRB3P1-201ENST00000449338 276 ntBASIC14.27□□□□□ -0.13
COL6A5A8TX70 TERF1P3-201ENST00000505638 1227 ntBASIC14.27□□□□□ -0.13
COL6A5A8TX70 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL6A5A8TX70 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 ENSA-205ENST00000361532 792 ntTSL 2 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 ELK2BP-201ENST00000415014 1224 ntBASIC14.27□□□□□ -0.13
COL6A5A8TX70 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.27□□□□□ -0.13
COL6A5A8TX70 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC14.27□□□□□ -0.13
COL6A5A8TX70 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 AL512353.2-201ENST00000448759 1962 ntBASIC14.26□□□□□ -0.13
COL6A5A8TX70 AC236430.1-201ENST00000402231 743 ntBASIC14.26□□□□□ -0.13
COL6A5A8TX70 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.26□□□□□ -0.13
COL6A5A8TX70 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL6A5A8TX70 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
COL6A5A8TX70 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.25□□□□□ -0.13
COL6A5A8TX70 AC015911.4-201ENST00000588022 1070 ntBASIC14.25□□□□□ -0.13
COL6A5A8TX70 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms