Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 AC036111.1-201ENST00000533973 1582 ntBASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 AC007663.1-201ENST00000438948 1240 ntBASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 AL512604.3-201ENST00000569583 964 ntBASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS9D1Q9Y2B5 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 NAPSB-206ENST00000562112 1266 ntBASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 KRT8P50-201ENST00000562022 1438 ntBASIC18.4■□□□□ 0.54
VPS9D1Q9Y2B5 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS9D1Q9Y2B5 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS9D1Q9Y2B5 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
VPS9D1Q9Y2B5 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 MMP23A-201ENST00000234610 1017 ntBASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.39■□□□□ 0.53
VPS9D1Q9Y2B5 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS9D1Q9Y2B5 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms