Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 RPL28-205ENST00000558131 444 ntTSL 5 BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 AC093028.1-201ENST00000622998 982 ntBASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 AC034236.2-201ENST00000606662 1610 ntBASIC27.94■■■□□ 2.06
COL17A1Q9UMD9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 MTDHP4-201ENST00000600287 670 ntBASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL17A1Q9UMD9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 AC092865.6-201ENST00000642101 219 ntBASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
COL17A1Q9UMD9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 GREM1-201ENST00000560677 623 ntTSL 4 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL17A1Q9UMD9 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 FUOM-202ENST00000368551 628 ntTSL 3 BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC27.9■■■□□ 2.06
COL17A1Q9UMD9 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 AL139400.1-201ENST00000366220 510 ntBASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 KRT18P27-201ENST00000427733 1299 ntBASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 AC138761.1-201ENST00000584393 385 ntBASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
COL17A1Q9UMD9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC27.89■■■□□ 2.05
COL17A1Q9UMD9 NKAPP1-205ENST00000585790 367 ntBASIC27.89■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms