Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 AL355355.2-201ENST00000442321 338 ntBASIC16.55■□□□□ 0.24
VSX1Q9NZR4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VSX1Q9NZR4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 AP000593.1-201ENST00000393668 712 ntBASIC16.54■□□□□ 0.24
VSX1Q9NZR4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 AP005242.2-201ENST00000580065 1175 ntBASIC16.54■□□□□ 0.24
VSX1Q9NZR4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.54■□□□□ 0.24
VSX1Q9NZR4 AC026471.5-201ENST00000615068 467 ntBASIC16.54■□□□□ 0.24
VSX1Q9NZR4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VSX1Q9NZR4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 Z99916.2-201ENST00000604037 246 ntBASIC16.53■□□□□ 0.24
VSX1Q9NZR4 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VSX1Q9NZR4 LETM1P2-201ENST00000597330 2178 ntBASIC16.53■□□□□ 0.24
VSX1Q9NZR4 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms