Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.04■□□□□ 0.64
TDP1Q9NUW8 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 AC005332.7-201ENST00000614046 2005 ntBASIC19.03■□□□□ 0.64
TDP1Q9NUW8 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 KRT17P6-201ENST00000453795 1220 ntBASIC19.03■□□□□ 0.64
TDP1Q9NUW8 EMBP1-201ENST00000458200 901 ntBASIC19.03■□□□□ 0.64
TDP1Q9NUW8 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.03■□□□□ 0.64
TDP1Q9NUW8 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TDP1Q9NUW8 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 FDX1P1-201ENST00000449115 551 ntBASIC19.02■□□□□ 0.64
TDP1Q9NUW8 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.02■□□□□ 0.64
TDP1Q9NUW8 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.63
TDP1Q9NUW8 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
TDP1Q9NUW8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
TDP1Q9NUW8 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
TDP1Q9NUW8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TDP1Q9NUW8 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 MIR149-201ENST00000384879 89 ntBASIC19.01■□□□□ 0.63
TDP1Q9NUW8 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 VENTXP7-201ENST00000475503 772 ntBASIC19.01■□□□□ 0.63
TDP1Q9NUW8 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 AC099336.1-202ENST00000602961 463 ntBASIC19.01■□□□□ 0.63
TDP1Q9NUW8 AC138894.3-201ENST00000603787 634 ntBASIC19.01■□□□□ 0.63
TDP1Q9NUW8 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.01■□□□□ 0.63
TDP1Q9NUW8 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
TDP1Q9NUW8 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19■□□□□ 0.63
TDP1Q9NUW8 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
TDP1Q9NUW8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
TDP1Q9NUW8 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TDP1Q9NUW8 IGHV3-47-201ENST00000425060 335 ntBASIC19■□□□□ 0.63
TDP1Q9NUW8 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19■□□□□ 0.63
TDP1Q9NUW8 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19■□□□□ 0.63
TDP1Q9NUW8 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19■□□□□ 0.63
TDP1Q9NUW8 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19■□□□□ 0.63
TDP1Q9NUW8 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19■□□□□ 0.63
TDP1Q9NUW8 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19■□□□□ 0.63
TDP1Q9NUW8 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TDP1Q9NUW8 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms