Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 AC068587.6-202ENST00000641839 5619 ntBASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 KRT18P20-201ENST00000548986 1279 ntBASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 TPRG1LP1-201ENST00000598702 760 ntBASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VCX3AQ9NNX9 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 PCDHA1-201ENST00000378133 2726 ntBASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 CYP21A1P-202ENST00000354927 1481 ntBASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
VCX3AQ9NNX9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCX3AQ9NNX9 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 DOC2GP-204ENST00000639052 2548 ntBASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.28■□□□□ 0.36
VCX3AQ9NNX9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms