Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.82■□□□□ 0.6
CHFRQ96EP1 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHFRQ96EP1 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.82■□□□□ 0.6
CHFRQ96EP1 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 AL022342.1-201ENST00000400363 863 ntBASIC18.81■□□□□ 0.6
CHFRQ96EP1 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 KRT18P41-201ENST00000518924 1277 ntBASIC18.81■□□□□ 0.6
CHFRQ96EP1 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.81■□□□□ 0.6
CHFRQ96EP1 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHFRQ96EP1 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 HLA-A-201ENST00000376802 1334 ntBASIC18.8■□□□□ 0.6
CHFRQ96EP1 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 AF238378.1-201ENST00000526806 358 ntBASIC18.8■□□□□ 0.6
CHFRQ96EP1 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 REXO1L6P-202ENST00000619970 1078 ntBASIC18.8■□□□□ 0.6
CHFRQ96EP1 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.8■□□□□ 0.6
CHFRQ96EP1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHFRQ96EP1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHFRQ96EP1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.79■□□□□ 0.6
CHFRQ96EP1 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms