Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
ZNF540Q8NDQ6 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 SIRPAP1-201ENST00000448467 1770 ntBASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.15■□□□□ 0.34
ZNF540Q8NDQ6 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 KRT8P8-201ENST00000434750 1448 ntBASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
ZNF540Q8NDQ6 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 SOX15-203ENST00000570788 1093 ntBASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ZNF540Q8NDQ6 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms