Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.65■□□□□ 0.9
USP38Q8NB14 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.65■□□□□ 0.9
USP38Q8NB14 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.65■□□□□ 0.9
USP38Q8NB14 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
USP38Q8NB14 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP38Q8NB14 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
USP38Q8NB14 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
USP38Q8NB14 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.64■□□□□ 0.89
USP38Q8NB14 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
USP38Q8NB14 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.64■□□□□ 0.89
USP38Q8NB14 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP38Q8NB14 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.64■□□□□ 0.89
USP38Q8NB14 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
USP38Q8NB14 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.64■□□□□ 0.89
USP38Q8NB14 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.64■□□□□ 0.89
USP38Q8NB14 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.64■□□□□ 0.89
USP38Q8NB14 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP38Q8NB14 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
USP38Q8NB14 AC024243.1-201ENST00000609234 778 ntBASIC20.64■□□□□ 0.89
USP38Q8NB14 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.64■□□□□ 0.89
USP38Q8NB14 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.64■□□□□ 0.89
USP38Q8NB14 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.64■□□□□ 0.89
USP38Q8NB14 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP38Q8NB14 AL138781.2-201ENST00000617896 1843 ntBASIC20.64■□□□□ 0.89
USP38Q8NB14 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.64■□□□□ 0.89
USP38Q8NB14 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
USP38Q8NB14 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.64■□□□□ 0.89
USP38Q8NB14 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.64■□□□□ 0.89
USP38Q8NB14 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
USP38Q8NB14 AC036111.1-201ENST00000533973 1582 ntBASIC20.63■□□□□ 0.89
USP38Q8NB14 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USP38Q8NB14 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.63■□□□□ 0.89
USP38Q8NB14 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
USP38Q8NB14 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.63■□□□□ 0.89
USP38Q8NB14 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USP38Q8NB14 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 AL645929.1-201ENST00000420084 975 ntBASIC20.63■□□□□ 0.89
USP38Q8NB14 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USP38Q8NB14 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USP38Q8NB14 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.63■□□□□ 0.89
USP38Q8NB14 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.63■□□□□ 0.89
USP38Q8NB14 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
USP38Q8NB14 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.63■□□□□ 0.89
USP38Q8NB14 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP38Q8NB14 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP38Q8NB14 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.62■□□□□ 0.89
USP38Q8NB14 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC20.62■□□□□ 0.89
USP38Q8NB14 TSSC2-201ENST00000450217 709 ntBASIC20.62■□□□□ 0.89
USP38Q8NB14 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.62■□□□□ 0.89
USP38Q8NB14 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.62■□□□□ 0.89
USP38Q8NB14 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
USP38Q8NB14 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.62■□□□□ 0.89
USP38Q8NB14 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USP38Q8NB14 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP38Q8NB14 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
USP38Q8NB14 AP002383.4-201ENST00000442518 975 ntBASIC20.61■□□□□ 0.89
USP38Q8NB14 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.61■□□□□ 0.89
USP38Q8NB14 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.61■□□□□ 0.89
USP38Q8NB14 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.61■□□□□ 0.89
USP38Q8NB14 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP38Q8NB14 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms