Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DEPDC4Q8N2C3 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 AC004264.1-201ENST00000608354 794 ntBASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DEPDC4Q8N2C3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 TSPY21P-201ENST00000433481 731 ntBASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
DEPDC4Q8N2C3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 ESPNP-201ENST00000270691 2015 ntBASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 GNAS-203ENST00000306120 1878 ntBASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms