Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DRAXINP1-201ENST00000437611 948 ntBASIC18.79■□□□□ 0.6
USP39Q53GS9 TSPY18P-201ENST00000441642 509 ntBASIC18.79■□□□□ 0.6
USP39Q53GS9 LINC00265-3P-201ENST00000447588 903 ntBASIC18.79■□□□□ 0.6
USP39Q53GS9 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.79■□□□□ 0.6
USP39Q53GS9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.79■□□□□ 0.6
USP39Q53GS9 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 SDHAP1-207ENST00000440850 2000 ntBASIC18.79■□□□□ 0.6
USP39Q53GS9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
USP39Q53GS9 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
USP39Q53GS9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
USP39Q53GS9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.79■□□□□ 0.6
USP39Q53GS9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP39Q53GS9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.78■□□□□ 0.6
USP39Q53GS9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.78■□□□□ 0.6
USP39Q53GS9 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.78■□□□□ 0.6
USP39Q53GS9 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.78■□□□□ 0.6
USP39Q53GS9 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.78■□□□□ 0.6
USP39Q53GS9 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.78■□□□□ 0.6
USP39Q53GS9 EMBP1-201ENST00000458200 901 ntBASIC18.78■□□□□ 0.6
USP39Q53GS9 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.78■□□□□ 0.6
USP39Q53GS9 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.78■□□□□ 0.6
USP39Q53GS9 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.78■□□□□ 0.6
USP39Q53GS9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.78■□□□□ 0.6
USP39Q53GS9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.78■□□□□ 0.6
USP39Q53GS9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.78■□□□□ 0.6
USP39Q53GS9 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
USP39Q53GS9 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP39Q53GS9 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
USP39Q53GS9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.77■□□□□ 0.6
USP39Q53GS9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
USP39Q53GS9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
USP39Q53GS9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
USP39Q53GS9 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.77■□□□□ 0.6
USP39Q53GS9 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 PVRIG2P-201ENST00000435460 978 ntBASIC18.77■□□□□ 0.6
USP39Q53GS9 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.77■□□□□ 0.6
USP39Q53GS9 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
USP39Q53GS9 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.77■□□□□ 0.6
USP39Q53GS9 AC012615.1-201ENST00000565797 1299 ntBASIC18.77■□□□□ 0.6
USP39Q53GS9 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.77■□□□□ 0.6
USP39Q53GS9 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.77■□□□□ 0.6
USP39Q53GS9 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.77■□□□□ 0.6
USP39Q53GS9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.77■□□□□ 0.6
USP39Q53GS9 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP39Q53GS9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.77■□□□□ 0.6
USP39Q53GS9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
USP39Q53GS9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP39Q53GS9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP39Q53GS9 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
USP39Q53GS9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.76■□□□□ 0.59
USP39Q53GS9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP39Q53GS9 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.76■□□□□ 0.59
USP39Q53GS9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP39Q53GS9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
USP39Q53GS9 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USP39Q53GS9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.76■□□□□ 0.59
USP39Q53GS9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USP39Q53GS9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.76■□□□□ 0.59
USP39Q53GS9 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP39Q53GS9 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.76■□□□□ 0.59
USP39Q53GS9 TPSP2-201ENST00000561760 610 ntBASIC18.76■□□□□ 0.59
USP39Q53GS9 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP39Q53GS9 AL732292.2-201ENST00000609649 430 ntBASIC18.76■□□□□ 0.59
USP39Q53GS9 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms