Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.68■□□□□ 0.74
USP41Q3LFD5 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.68■□□□□ 0.74
USP41Q3LFD5 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 FAAHP1-202ENST00000446499 1238 ntBASIC19.67■□□□□ 0.74
USP41Q3LFD5 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 AL121772.3-201ENST00000610840 674 ntBASIC19.67■□□□□ 0.74
USP41Q3LFD5 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 KRT8P50-201ENST00000562022 1438 ntBASIC19.67■□□□□ 0.74
USP41Q3LFD5 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP41Q3LFD5 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.67■□□□□ 0.74
USP41Q3LFD5 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.66■□□□□ 0.74
USP41Q3LFD5 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 TSPY19P-201ENST00000418461 509 ntBASIC19.66■□□□□ 0.74
USP41Q3LFD5 TSPY18P-201ENST00000441642 509 ntBASIC19.66■□□□□ 0.74
USP41Q3LFD5 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
USP41Q3LFD5 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP41Q3LFD5 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP41Q3LFD5 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP41Q3LFD5 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.65■□□□□ 0.74
USP41Q3LFD5 AP000593.1-201ENST00000393668 712 ntBASIC19.65■□□□□ 0.74
USP41Q3LFD5 AC104819.1-201ENST00000504587 486 ntBASIC19.65■□□□□ 0.74
USP41Q3LFD5 GUSBP12-201ENST00000513727 720 ntBASIC19.65■□□□□ 0.74
USP41Q3LFD5 KRT18P41-201ENST00000518924 1277 ntBASIC19.65■□□□□ 0.74
USP41Q3LFD5 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.65■□□□□ 0.74
USP41Q3LFD5 AC091304.2-201ENST00000564639 760 ntBASIC19.65■□□□□ 0.74
USP41Q3LFD5 IFNL4P1-201ENST00000607083 540 ntBASIC19.65■□□□□ 0.74
USP41Q3LFD5 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP41Q3LFD5 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.65■□□□□ 0.74
USP41Q3LFD5 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP41Q3LFD5 KRT89P-201ENST00000620027 1478 ntBASIC19.65■□□□□ 0.74
USP41Q3LFD5 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP41Q3LFD5 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
USP41Q3LFD5 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.74
USP41Q3LFD5 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.64■□□□□ 0.74
USP41Q3LFD5 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP41Q3LFD5 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
USP41Q3LFD5 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP41Q3LFD5 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP41Q3LFD5 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP41Q3LFD5 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP41Q3LFD5 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP41Q3LFD5 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP41Q3LFD5 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP41Q3LFD5 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP41Q3LFD5 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 MTMR9LP-203ENST00000426597 1545 ntBASIC19.64■□□□□ 0.73
USP41Q3LFD5 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP41Q3LFD5 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP41Q3LFD5 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
USP41Q3LFD5 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms