Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 AC112777.1-201ENST00000540175 1423 ntBASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 MIR564-202ENST00000385049 94 ntBASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 AP003041.3-201ENST00000527151 707 ntBASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 NTF6B-201ENST00000591913 560 ntBASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 AC010653.2-201ENST00000623505 997 ntBASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTCHD3Q3KNS1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 WWOX-216ENST00000569818 525 ntBASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 MYC-208ENST00000641036 567 ntBASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PTCHD3Q3KNS1 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.08■□□□□ 0.49
PTCHD3Q3KNS1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTCHD3Q3KNS1 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
PTCHD3Q3KNS1 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTCHD3Q3KNS1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 AK4P3-201ENST00000418260 669 ntBASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 BX664615.1-201ENST00000443558 458 ntBASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 MIR3180-5-201ENST00000583743 153 ntBASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
PTCHD3Q3KNS1 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 AC117947.1-201ENST00000427448 529 ntBASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.07■□□□□ 0.48
PTCHD3Q3KNS1 AC139887.4-201ENST00000607877 719 ntBASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms