Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.76■□□□□ 0.91
TPM4P67936 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
TPM4P67936 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
TPM4P67936 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.76■□□□□ 0.91
TPM4P67936 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TPM4P67936 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
TPM4P67936 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.76■□□□□ 0.91
TPM4P67936 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.76■□□□□ 0.91
TPM4P67936 AC092437.1-201ENST00000624794 1048 ntBASIC20.76■□□□□ 0.91
TPM4P67936 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.76■□□□□ 0.91
TPM4P67936 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM4P67936 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 KRT8P32-201ENST00000512863 1461 ntBASIC20.75■□□□□ 0.91
TPM4P67936 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TPM4P67936 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
TPM4P67936 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.75■□□□□ 0.91
TPM4P67936 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.75■□□□□ 0.91
TPM4P67936 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.75■□□□□ 0.91
TPM4P67936 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.75■□□□□ 0.91
TPM4P67936 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TPM4P67936 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 KRT8P45-201ENST00000414328 1447 ntBASIC20.75■□□□□ 0.91
TPM4P67936 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TPM4P67936 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
TPM4P67936 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.75■□□□□ 0.91
TPM4P67936 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.75■□□□□ 0.91
TPM4P67936 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM4P67936 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.75■□□□□ 0.91
TPM4P67936 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
TPM4P67936 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC20.74■□□□□ 0.91
TPM4P67936 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
TPM4P67936 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC20.74■□□□□ 0.91
TPM4P67936 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
TPM4P67936 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.74■□□□□ 0.91
TPM4P67936 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.74■□□□□ 0.91
TPM4P67936 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM4P67936 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TPM4P67936 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
TPM4P67936 AC138028.4-201ENST00000564984 1845 ntBASIC20.74■□□□□ 0.91
TPM4P67936 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.73■□□□□ 0.91
TPM4P67936 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.73■□□□□ 0.91
TPM4P67936 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TPM4P67936 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TPM4P67936 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TPM4P67936 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.73■□□□□ 0.91
TPM4P67936 AC134043.2-201ENST00000624206 2238 ntBASIC20.73■□□□□ 0.91
TPM4P67936 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TPM4P67936 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TPM4P67936 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TPM4P67936 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.73■□□□□ 0.91
TPM4P67936 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TPM4P67936 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.73■□□□□ 0.91
TPM4P67936 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.73■□□□□ 0.91
TPM4P67936 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TPM4P67936 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
TPM4P67936 TSPY6P-201ENST00000448518 926 ntBASIC20.73■□□□□ 0.91
TPM4P67936 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.73■□□□□ 0.91
TPM4P67936 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TPM4P67936 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TPM4P67936 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms