Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
VCPP55072 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
VCPP55072 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.81■□□□□ 0.76
VCPP55072 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VCPP55072 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.81■□□□□ 0.76
VCPP55072 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
VCPP55072 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 KRT8P11-201ENST00000409686 1436 ntBASIC19.8■□□□□ 0.76
VCPP55072 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.8■□□□□ 0.76
VCPP55072 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.8■□□□□ 0.76
VCPP55072 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.8■□□□□ 0.76
VCPP55072 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.8■□□□□ 0.76
VCPP55072 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VCPP55072 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
VCPP55072 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.8■□□□□ 0.76
VCPP55072 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCPP55072 AL031598.1-201ENST00000561511 1773 ntBASIC19.8■□□□□ 0.76
VCPP55072 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VCPP55072 AC093525.10-201ENST00000625130 1569 ntBASIC19.79■□□□□ 0.76
VCPP55072 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.79■□□□□ 0.76
VCPP55072 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
VCPP55072 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.79■□□□□ 0.76
VCPP55072 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPP55072 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPP55072 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.79■□□□□ 0.76
VCPP55072 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.79■□□□□ 0.76
VCPP55072 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 NEFHP1-201ENST00000412845 2629 ntBASIC19.79■□□□□ 0.76
VCPP55072 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.79■□□□□ 0.76
VCPP55072 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
VCPP55072 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCPP55072 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
VCPP55072 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 SPDYE13P-201ENST00000445314 798 ntBASIC19.78■□□□□ 0.76
VCPP55072 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.78■□□□□ 0.76
VCPP55072 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
VCPP55072 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 AC139530.3-201ENST00000620344 690 ntBASIC19.78■□□□□ 0.76
VCPP55072 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VCPP55072 FEM1AP3-201ENST00000403722 1741 ntBASIC19.78■□□□□ 0.76
VCPP55072 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.78■□□□□ 0.76
VCPP55072 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VCPP55072 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
VCPP55072 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCPP55072 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.78■□□□□ 0.76
VCPP55072 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCPP55072 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms