Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 AC084018.2-201ENST00000613093 2607 ntBASIC19.43■□□□□ 0.7
LIG3P49916 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 AC004980.1-204ENST00000429707 299 ntBASIC19.43■□□□□ 0.7
LIG3P49916 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 AC073912.3-201ENST00000624414 853 ntBASIC19.43■□□□□ 0.7
LIG3P49916 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LIG3P49916 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.43■□□□□ 0.7
LIG3P49916 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIG3P49916 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG3P49916 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
LIG3P49916 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG3P49916 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 AL161938.1-201ENST00000569833 2180 ntBASIC19.42■□□□□ 0.7
LIG3P49916 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.42■□□□□ 0.7
LIG3P49916 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
LIG3P49916 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.42■□□□□ 0.7
LIG3P49916 AC116562.2-201ENST00000507042 360 ntBASIC19.42■□□□□ 0.7
LIG3P49916 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG3P49916 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.42■□□□□ 0.7
LIG3P49916 AC026271.3-201ENST00000571884 352 ntBASIC19.42■□□□□ 0.7
LIG3P49916 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG3P49916 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.42■□□□□ 0.7
LIG3P49916 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.42■□□□□ 0.7
LIG3P49916 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LIG3P49916 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIG3P49916 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 AC011270.2-201ENST00000624293 2550 ntBASIC19.41■□□□□ 0.7
LIG3P49916 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.41■□□□□ 0.7
LIG3P49916 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.41■□□□□ 0.7
LIG3P49916 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIG3P49916 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.41■□□□□ 0.7
LIG3P49916 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.41■□□□□ 0.7
LIG3P49916 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LIG3P49916 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.41■□□□□ 0.7
LIG3P49916 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.41■□□□□ 0.7
LIG3P49916 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.41■□□□□ 0.7
LIG3P49916 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.41■□□□□ 0.7
LIG3P49916 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LIG3P49916 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG3P49916 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LIG3P49916 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.4■□□□□ 0.7
LIG3P49916 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.4■□□□□ 0.7
LIG3P49916 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG3P49916 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms